STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106583548Probable tRNA pseudouridine synthase 2. (342 aa)    
Predicted Functional Partners:
gar1
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 0.977
LOC106604513
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 0.977
LOC106577940
H/ACA ribonucleoprotein complex subunit 3-like.
   
 0.967
LOC106608971
H/ACA ribonucleoprotein complex subunit 3 isoform X2.
   
 0.967
naf1
H/ACA ribonucleoprotein complex non-core subunit NAF1 isoform X1.
   
 
 0.948
nol5
Nucleolar protein 5.
  
 
 0.945
ENSSSAP00000057126
annotation not available
  
 
 0.945
nop56
Nucleolar protein 5A.
   
 
 0.941
ENSSSAP00000077165
annotation not available
   
 
 0.940
LOC106578539
rRNA 2'-O-methyltransferase fibrillarin-like.
   
 
 0.930
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.