STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
det1DET1 homolog isoform X1. (551 aa)    
Predicted Functional Partners:
LOC106569074
E3 ubiquitin-protein ligase RFWD2-like isoform X3.
    
 0.987
cop1
E3 ubiquitin-protein ligase RFWD2 isoform X1.
    
 0.987
LOC106561926
DNA damage-binding protein 1-like isoform X1.
    
 
 0.954
ddb1
Salmo salar DNA damage-binding protein 1 (ddb1), mRNA.
    
 
 0.954
LOC106560940
DET1 homolog.
  
  
 
0.900
ercc8
DNA excision repair protein ERCC-8 isoform X1.
     
  0.900
CUL4B
cullin-4B-like isoform X1; Belongs to the cullin family.
    
 
 0.791
LOC106574804
cullin-4A-like; Belongs to the cullin family.
    
 
 0.791
ENSSSAP00000016601
annotation not available
    
 
 0.791
LOC106598394
cullin-4A-like isoform X1; Belongs to the cullin family.
    
 
 0.791
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.