STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106582571Metalloendopeptidase. (283 aa)    
Predicted Functional Partners:
LOC106560783
LOW QUALITY PROTEIN: ornithine decarboxylase antizyme 2-like.
      
 0.681
GDF10
Growth/differentiation factor 10-like.
    
 
 0.619
ube2v2
Ubiquitin-conjugating enzyme E2 variant 2 isoform X1.
      
 0.600
LOC106575861
Kell blood group glycoprotein-like.
      
 0.593
foxa2
Hepatocyte nuclear factor 3-beta.
      
 0.544
LOC106576115
Hepatocyte nuclear factor 3-beta-like.
      
 0.544
LOC106613058
Chordin-like.
    
 
 0.542
LOC106581290
Chordin; Belongs to the chordin family.
    
 
 0.542
LOC106560589
Histidine-rich glycoprotein-like.
    
 
 0.414
LOC106560590
fetuin-B-like isoform X2.
    
 
 0.414
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.