STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106589580Class A basic helix-loop-helix protein 15-like. (193 aa)    
Predicted Functional Partners:
LHX3
LIM/homeobox protein Lhx3-like isoform X1.
   
  
 0.668
lhx3
LIM/homeobox protein Lhx3.
   
  
 0.668
LOC106574614
POU domain protein.
   
  
 0.658
cck-n
cholecystokinin-N precursor.
   
  
 0.632
LOC106587477
Vesicular glutamate transporter 2.1.
   
  
 0.628
LOC106586041
Zinc finger protein ZIC 5-like.
    
 
 0.627
zic5
Zinc finger protein ZIC 5.
    
 
 0.627
esrrb
Steroid hormone receptor ERR2 isoform X2.
    
 
 0.623
ESRRB
Steroid hormone receptor ERR2-like isoform X4.
    
 
 0.623
LOC100196589
Somatolactin beta precursor.
   
  
 0.533
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.