STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp42Ubiquitin carboxyl-terminal hydrolase 42; Belongs to the peptidase C19 family. (1131 aa)    
Predicted Functional Partners:
LOC106608582
CAAX prenyl protease 2-like.
     
 0.759
LOC106577518
CAAX prenyl protease 2-like.
     
 0.759
suds3
Sin3 histone deacetylase corepressor complex component SDS3 isoform X2.
    
 0.737
suds3-2
Sin3 histone deacetylase corepressor complex component SDS3 isoform X1.
    
 0.737
ENSSSAP00000071257
annotation not available
     
 0.728
LOC106612584
E3 ubiquitin-protein ligase TRIP12-like isoform X1.
      
 0.584
LOC106580884
E3 ubiquitin-protein ligase TRIP12 isoform X1.
      
 0.584
ENSSSAP00000111429
Ubiquitin specific peptidase 10.
     
0.583
LOC106587349
Ubiquitin carboxyl-terminal hydrolase.
     
0.583
LOC106560445
Breast cancer metastasis-suppressor 1 homolog isoform X2.
    
 0.553
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.