STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100195817Thymidylate kinase. (189 aa)    
Predicted Functional Partners:
tyms
Thymidylate synthase.
  
 
 0.989
LOC106591566
Thymidine kinase.
  
 
 0.984
kith
Thymidine kinase.
  
 
 0.984
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial isoform X1.
  
 
 0.975
ak9
Adenylate kinase 9 isoform X1.
    
 0.973
LOC106610063
Deoxycytidylate deaminase-like isoform X1.
    
 0.971
LOC106602441
Deoxycytidylate deaminase-like.
    
 0.971
LOC106567863
Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
 
 0.967
rir1
Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
 
 0.967
LOC106600677
Nucleoside diphosphate kinase.
  
 
 0.956
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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