STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106611995Ras-related protein Rab-33A-like. (239 aa)    
Predicted Functional Partners:
trappc1
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.844
RIC1
RAB6A-GEF complex partner protein 1.
    
 0.830
RIC1-2
RAB6A-GEF complex partner protein 1-like isoform X1.
    
 0.830
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.810
rab33b
Ras-related protein Rab-33B.
  
 
 
0.780
LOC106611777
Ras-related protein Rab-33B-like.
  
 
 
0.780
atg16l1
Autophagy-related protein 16-1 isoform X1.
    
 
 0.766
ENSSSAP00000037561
annotation not available
    
 
 0.766
LOC106566831
TBC1 domain family member 25-like isoform X2.
     
 0.765
LOC106572217
TBC1 domain family member 25-like isoform X1.
     
 0.765
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.