STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shpkSedoheptulokinase isoform X1. (497 aa)    
Predicted Functional Partners:
PSD8
26S proteasome non-ATPase regulatory subunit 8.
   
 0.839
LOC106583025
26S proteasome non-ATPase regulatory subunit 6.
   
 0.831
LOC106565847
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 6.
   
 0.831
PSMD12
26S proteasome non-ATPase regulatory subunit 12-like.
   
 0.822
psd12
26S proteasome non-ATPase regulatory subunit 12.
   
 0.822
PSMD2
26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.
   
 0.820
ENSSSAP00000110757
26S proteasome non-ATPase regulatory subunit 2-like.
   
 0.820
psd3
Proteasome (Prosome, macropain) 26S subunit, non ATPase, 3-1.
   
 0.816
LOC100194647
Proteasome (Prosome, macropain) 26S subunit, non ATPase, 3-2 isoform X1.
   
 0.816
LOC100194646
Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 13.
   
 0.813
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.