STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106578494Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c. (292 aa)    
Predicted Functional Partners:
LOC106589628
Protoheme IX farnesyltransferase, mitochondrial; Converts protoheme IX and farnesyl diphosphate to heme O. Belongs to the ubiA prenyltransferase family.
   
 
 0.976
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
     
 0.936
LOC106564458
LOW QUALITY PROTEIN: heme oxygenase 2-like.
     
 0.922
LOC106606500
Heme oxygenase 2-like.
     
 0.922
LOC106599140
Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c.
  
  
 
0.901
LOC106590030
Heme oxygenase-like.
     
  0.900
LOC106607056
Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.
     
  0.900
LOC106590330
Heme oxygenase-like.
     
  0.900
LOC106601881
Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.
     
  0.900
LOC106601306
Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.
     
  0.900
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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