STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106571990Leucine-rich repeat-containing protein 47-like. (568 aa)    
Predicted Functional Partners:
LOC106601350
phenylalanine--tRNA ligase alpha subunit.
  
 0.991
syfa
Phenylalanyl-tRNA synthetase alpha chain.
  
 0.991
EPRS1
Bifunctional glutamate/proline--tRNA ligase-like.
  
 
 0.970
LOC106561878
Bifunctional glutamate/proline--tRNA ligase-like isoform X1.
  
 
 0.970
yars1
Tyrosine--tRNA ligase.
  
  
 0.964
LOC106563953
Ferredoxin-fold anticodon-binding domain-containing protein 1 homolog.
  
 0.963
ENSSSAP00000028634
annotation not available
  
 0.963
LOC106565968
phenylalanine--tRNA ligase, mitochondrial-like.
  
 0.963
ENSSSAP00000071129
phenylalanyl-tRNA synthetase 2, mitochondrial.
  
 0.963
riok1
Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.
    
 
 0.952
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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