STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106586658Tumor necrosis factor ligand superfamily member 13B-like; Belongs to the tumor necrosis factor family. (253 aa)    
Predicted Functional Partners:
ENSSSAP00000009531
annotation not available
    
 0.977
tnfrsf17
Tumor necrosis factor receptor superfamily member 17.
    
 0.977
tnfrsf13b
Tumor necrosis factor receptor superfamily member 13B isoform X1.
    
 0.938
LOC106589221
Tumor necrosis factor receptor superfamily member 13B-like.
    
 0.938
cd40l
CD40 ligand; Belongs to the tumor necrosis factor family.
   
 
 0.893
LOC106577651
Tumor necrosis factor ligand superfamily member 12-like; Belongs to the tumor necrosis factor family.
   
 0.817
LOC106608761
Tumor necrosis factor ligand superfamily member 12-like; Belongs to the tumor necrosis factor family.
   
 0.817
LOC100380862
Mitogen-activated protein kinase kinase kinase 14 isoform X1.
     
 0.716
LOC106607326
Mitogen-activated protein kinase kinase kinase 14-like.
     
 0.716
LOC106579033
Uncharacterized protein LOC106579033 isoform X1.
     
 0.716
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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