STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106593293ATP-dependent RNA helicase DDX1-like. (403 aa)    
Predicted Functional Partners:
LOC106610620
UPF0568 protein C14orf166 homolog isoform X1.
   
 0.979
LOC106603001
UPF0568 protein C14orf166 homolog.
   
 0.979
rtcb
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
   
 0.974
ENSSSAP00000065540
annotation not available
   
 0.974
ENSSSAP00000011049
annotation not available
   
 
 0.955
fam98a
Protein FAM98A.
   
 
 0.955
cssa25h2orf49
Ashwin.
    
 0.933
fam98b
Protein FAM98B.
    
 0.925
LOC106611156
Protein FAM98B-like.
    
 0.925
dhx36
ATP-dependent RNA helicase DHX36.
   
 0.888
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.