STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSSAP00000083632Si:dkey-83m22.7. (188 aa)    
Predicted Functional Partners:
LOC106572977
Transcription initiation factor TFIID subunit 2.
    
 0.757
ift140
Intraflagellar transport protein 140 homolog isoform X2.
    
 0.754
LOC106593292
WD repeat-containing protein 19-like.
    
 0.751
sympk
Symplekin.
    
 0.740
wdr35
WD repeat-containing protein 35.
    
 0.723
md2l1
Mitotic spindle assembly checkpoint protein MAD2A.
   
 0.717
LOC106577502
Mitotic spindle assembly checkpoint protein MAD2A-like.
   
 0.717
LOC106604983
Transcription initiation factor TFIID subunit 12-like.
   
 0.703
taf12
Transcription initiation factor TFIID subunit 12 isoform X1.
   
 0.703
LOC106567893
Transcription initiation factor TFIID subunit 9-like isoform X1.
    
 0.699
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.