STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106604249Caltractin-like. (159 aa)    
Predicted Functional Partners:
xpc
DNA repair protein complementing XP-C cells.
    
 0.981
sfi1
Protein SFI1 homolog isoform X1.
    
 
 0.943
LOC106612201
Centrin-1-like isoform X2.
  
  
 
0.901
mcm3ap
Germinal-center associated nuclear protein.
    
 
 0.869
sac3d1
SAC3 domain-containing protein 1 isoform X2.
    
 
 0.849
ddb2
DNA damage-binding protein 2.
   
 0.804
LOC106572481-2
Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.
   
 
 0.790
LOC106572481
Ubiquitin-conjugating enzyme E2 variant 1 isoform X1.
   
 
 0.790
ENSSSAP00000041153
annotation not available
   
 
 0.790
LOC106605055
Transcription and mRNA export factor ENY2-2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 comple [...]
   
 
 0.762
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.