STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106607816Clusterin; Belongs to the clusterin family. (473 aa)    
Predicted Functional Partners:
LOC106571686
Activator of 90 kDa heat shock protein ATPase homolog 1-like.
      
 0.713
DNAJA4
dnaJ homolog subfamily A member 4-like.
      
 0.710
fosl2
Fos-related antigen 2 isoform X1.
      
 0.683
LOC106601116
AN1-type zinc finger protein 2A-like isoform X1.
      
 0.669
ku70
ATP-dependent DNA helicase 2 subunit 1 isoform X1.
    
 
 0.668
ENSSSAP00000115468
X-ray repair complementing defective repair in Chinese hamster cells 6.
    
 
 0.668
LOC106601397
Probable ATP-dependent RNA helicase DDX5 isoform X1; Belongs to the DEAD box helicase family.
      
 0.667
DDX5
Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.
      
 0.667
ENSSSAP00000115748
Peptidyl-prolyl cis-trans isomerase FKBP5-like.
      
 0.600
EEF1A1
Eukaryotic translation elongation factor 1 alpha 1.
      
 0.579
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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