STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106611818Eukaryotic peptide chain release factor subunit 1-like. (482 aa)    
Predicted Functional Partners:
ENSSSAP00000004294
annotation not available
   
 
 0.965
ABCE1
ATP binding cassette subfamily E member 1.
   
 
 0.965
abce1
ATP-binding cassette sub-family E member 1.
   
 
 0.965
smg1
Serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family.
    
 
 0.940
Fau
Small subunit ribosomal protein S30e.
   
 0.940
rs30
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.940
ENSSSAP00000052427
annotation not available
   
 0.940
ENSSSAP00000060568
annotation not available
   
 0.940
ubim
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.940
LOC106594919
Serine/threonine-protein kinase SMG1-like.
    
 
 0.940
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.