STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100380751Tenascin isoform X1. (1746 aa)    
Predicted Functional Partners:
cd40l
CD40 ligand; Belongs to the tumor necrosis factor family.
    
   0.891
LOC106584646
Aggrecan core protein-like.
   
 0.806
LOC106562525
Aggrecan core protein-like.
   
 0.806
LOC100380783
Aggrecan core protein.
   
 0.806
LOC106561101
Aggrecan core protein-like isoform X1.
   
 0.806
LOC106608858
Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like isoform X1.
    
0.756
LOC106577822
Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like.
    
0.756
LOC106566909
Complement receptor type 2-like isoform X4.
    
 0.756
ENSSSAP00000028710
annotation not available
   
 0.751
LOC106605320
Brevican core protein-like isoform X1.
   
 0.736
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.