STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106580064AN1-type zinc finger protein 5-like isoform X1. (300 aa)    
Predicted Functional Partners:
LOC106573758
Choline kinase alpha-like.
   
  
 0.765
LOC106567675
Rab GTPase-binding effector protein 1-like isoform X1.
   
 0.754
LOC106603450
Rab GTPase-binding effector protein 1-like isoform X2.
   
 0.754
rabep2
Rab GTPase-binding effector protein 2.
   
 0.750
LOC106583901
Rab GTPase-binding effector protein 2-like isoform X1.
   
 0.750
kpna4
Karyopherin subunit alpha 4.
   
  
 0.724
fjx1
Four-jointed box protein 1.
      
 0.723
LOC106609839
Ras-related protein Rab-21.
   
 
 0.607
ENSSSAP00000012232
annotation not available
    
 0.528
LOC100194654
Salmo salar ribosomal protein S27-3 (LOC100194654), mRNA.
    
 0.528
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.