STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106572729Integrin beta; Belongs to the integrin beta chain family. (811 aa)    
Predicted Functional Partners:
LOC106575134
Integrin alpha-4-like isoform X1; Belongs to the integrin alpha chain family.
   
 0.980
itga4
Integrin alpha-4; Belongs to the integrin alpha chain family.
   
 0.977
Finc
Fibronectin 1.
    
 0.959
LOC106598299
Vascular cell adhesion protein 1-like isoform X1.
   
 0.954
LOC106588992
Focal adhesion kinase 1-like isoform X1; Belongs to the protein kinase superfamily. Tyr protein kinase family.
   
 0.946
LOC106582526
Fibronectin-like isoform X1.
   
 
 0.938
vcam1
Vascular cell adhesion protein 1.
   
 
 0.931
LOC100526765
LOW QUALITY PROTEIN: vascular cell adhesion protein 1.
   
 
 0.931
LOC100380665
Talin-1 isoform X2.
   
 0.920
PRKCA
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
   
 0.911
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.