STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106587068USP6 N-terminal-like protein. (555 aa)    
Predicted Functional Partners:
LOC106567664
Rab5 GDP/GTP exchange factor-like.
   
 0.687
rabgef1
Rab5 GDP/GTP exchange factor isoform X2.
   
 0.687
LOC106612901
Rab5 GDP/GTP exchange factor-like.
   
 0.687
LOC106580958
Rab5 GDP/GTP exchange factor-like.
   
 0.687
RABX5
Rab5 GDP/GTP exchange factor.
   
  0.682
rab43
Ras-related protein Rab-43.
    
 0.573
LOC106596871
Ras-related protein Rab-19-like.
    
 0.549
ENSSSAP00000022015
annotation not available
    
 0.549
LOC106595981
Ras-related protein Rab-19-like.
    
 0.549
ENSSSAP00000022626
annotation not available
    
 0.549
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.