STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106572556ATP-dependent RNA helicase DDX19A-like isoform X2. (482 aa)    
Predicted Functional Partners:
NUP214
Nuclear pore complex protein Nup214-like isoform X2.
    
 
 0.960
gle1
Nucleoporin GLE1.
    
 
 0.960
LOC106582679
ATP-dependent RNA helicase DDX19A-like.
  
  
 
0.901
LOC106567140
ATP-dependent RNA helicase DDX19A isoform X2.
  
  
 
0.900
nxf1
Nuclear RNA export factor 1.
    
 
 0.694
LOC106604390
Nuclear RNA export factor 1-like isoform X1.
    
 
 0.694
LOC106603139
Nuclear RNA export factor 1-like.
    
 
 0.694
MIF4GD
MIF4G domain-containing protein B isoform X1.
    
   0.666
MIF4GD-2
MIF4G domain-containing protein B.
    
   0.666
LOC106606581
MIF4G domain-containing protein B-like isoform X1.
    
   0.666
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.