STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106599871ADP-ribosylation factor 1; Belongs to the small GTPase superfamily. Arf family. (289 aa)    
Predicted Functional Partners:
arf6
ADP-ribosylation factor 6-like; Belongs to the small GTPase superfamily. Arf family.
  
 
0.907
LOC106608083
ADP-ribosylation factor 6-like; Belongs to the small GTPase superfamily. Arf family.
  
 
0.907
ARF1
ADP-ribosylation factor 1; Belongs to the small GTPase superfamily. Arf family.
  
  
 
0.905
arf1l
ADP-ribosylation factor 1-like; Belongs to the small GTPase superfamily. Arf family.
  
  
 
0.905
LOC106611341
Intersectin-2-like.
    
 0.882
ENSSSAP00000067020
Intersectin 2b.
    
 0.882
PTPRK-2
Receptor-type tyrosine-protein phosphatase kappa isoform X7.
    
 0.857
LOC106584973
AP complex subunit beta.
   
 0.852
LOC106580331
AP complex subunit beta.
   
 0.852
copg2
Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
   
 0.823
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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