STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106575391Coiled-coil domain-containing protein 94-like. (343 aa)    
Predicted Functional Partners:
ccd49
Coiled-coil domain-containing protein 49.
   
 0.990
LOC106587943
pre-mRNA-splicing factor CWC25 homolog.
   
 0.990
LOC106586461
pre-mRNA-splicing factor CWC22 homolog isoform X2.
    
 0.987
LOC106562086
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like isoform X1.
   
 0.987
LOC106587179
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like isoform X1.
   
 0.987
LOC106582271
pre-mRNA-splicing factor CWC22 homolog.
    
 0.987
syf2
Pre-mRNA-splicing factor SYF2.
    
 0.986
LOC106610898
pre-mRNA-splicing factor syf2-like isoform X1.
    
 0.986
cdc40
pre-mRNA-processing factor 17.
    
 0.985
LOC106571808
pre-mRNA-processing factor 17-like.
    
 0.985
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.