STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106567761Uncharacterized protein LOC106567761. (227 aa)    
Predicted Functional Partners:
gemin7
Gem-associated protein 7 isoform X1.
      
 0.594
LOC100196059
U3 small nucleolar RNA-associated protein 6 homolog.
      
 0.545
LOC106564653
U3 small nucleolar RNA-associated protein 6 homolog.
      
 0.545
scg5
Neuroendocrine protein 7B2.
      
 0.510
7b2
Neuroendocrine protein 7B2.
      
 0.510
ENSSSAP00000015293
annotation not available
      
 0.474
ENSSSAP00000015308
annotation not available
      
 0.474
LOC106564655
Transcription elongation factor, mitochondrial-like.
      
 0.474
pou2af1
POU domain class 2-associating factor 1 isoform X1.
      
 0.457
ENSSSAP00000026216
annotation not available
      
 0.426
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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