STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdm6aLysine-specific demethylase 6A isoform X1. (1526 aa)    
Predicted Functional Partners:
LOC106583489
Retinoblastoma-binding protein 5-like isoform X1.
    
 0.980
LOC106565113
Retinoblastoma-binding protein 5 isoform X1.
    
 0.980
LOC106606575
Baculoviral IAP repeat-containing protein 6-like isoform X14.
   
 0.977
LOC106562981
set1/Ash2 histone methyltransferase complex subunit ASH2-like.
    
 0.976
LOC100194676
set1/Ash2 histone methyltransferase complex subunit ASH2 isoform X2.
    
 0.976
ATP6
ATP synthase subunit a; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subuni [...]
  
 0.967
pagr1
PAXIP1-associated glutamate-rich protein 1 isoform X2.
    
 0.944
LOC106573602
ATP synthase subunit delta, mitochondrial-like.
  
 0.941
LOC106613744
ATP synthase subunit delta, mitochondrial-like.
  
 0.941
atp5f1c
ATP synthase subunit gamma.
  
 0.930
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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