STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106603704Homeobox protein otx5-like isoform X1. (307 aa)    
Predicted Functional Partners:
NR2E3
Photoreceptor-specific nuclear receptor-like.
   
 
 0.654
LOC106560283
Transcription factor MafA-like.
    
 
 0.508
LOC106584133
Transcription factor MafA-like.
    
 
 0.508
thrb
Thyroid hormone receptor beta isoform X2.
   
 
 0.507
LOC106588669
Thyroid hormone receptor beta isoform X2.
   
 
 0.507
LOC106607496
Nuclear receptor subfamily 1 group D member 1-like.
    
 
 0.498
LOC106600825
Nuclear receptor subfamily 1 group D member 1-like.
    
 
 0.498
LOC106565462
Retinoic acid receptor gamma-like isoform X1.
    
 
 0.497
LOC106567065
Retinoic acid receptor gamma-A isoform X5.
    
 
 0.497
LOC106583300
Retinoic acid receptor gamma-A-like.
    
 
 0.497
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.