STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106575627Histone H2A; Belongs to the histone H2A family. (139 aa)    
Predicted Functional Partners:
mysm1
Histone H2A deubiquitinase MYSM1.
    
  0.817
LOC106613979
Histone H2A deubiquitinase MYSM1-like.
    
  0.817
aifm1
Apoptosis-inducing factor 1, mitochondrial isoform X1.
    
  0.656
ppia
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 
  0.650
LOC106583382
Protein B4.
   
 0.620
LOC106565886
Heterochromatin protein 1-binding protein 3-like.
   
 0.618
LOC106582993
Heterochromatin protein 1-binding protein 3-like.
   
 0.618
LOC106608825
Lysine-specific demethylase 6B-like isoform X1.
    
 0.567
LOC106577775
Lysine-specific demethylase 6B-like.
    
 0.567
LOC106563383
Lysine-specific demethylase 6B-like.
    
 0.542
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.