STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106576228Ankyrin repeat and SOCS box protein 13-like isoform X1. (280 aa)    
Predicted Functional Partners:
ENSSSAP00000039657
annotation not available
    
 0.782
LOC106590672
Transcription elongation factor B polypeptide 1 isoform X2; Belongs to the SKP1 family.
    
 0.782
commd2
COMM domain-containing protein 2.
    
 0.686
comd4
COMM domain-containing protein 4 isoform X1.
    
 0.677
commd9
COMM domain-containing protein 9.
    
  0.670
LOC106611139
COMM domain-containing protein 8-like.
   
  0.666
LOC106600549
COMM domain-containing protein 8-like isoform X1.
   
  0.666
LOC106585818
COMM domain-containing protein 1-like.
    
  0.665
elob
Transcription Elongation factor B polypeptide 2.
    
 0.665
Elob
Elongin B.
    
 0.665
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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