STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100196839Eukaryotic translation initiation factor 4E transporter isoform X2. (992 aa)    
Predicted Functional Partners:
LOC106605696
Probable ATP-dependent RNA helicase ddx6; Belongs to the DEAD box helicase family.
  
 0.919
LOC106577487
Probable ATP-dependent RNA helicase ddx6; Belongs to the DEAD box helicase family.
  
 0.919
ddx6
Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.
  
 0.919
LOC106588242
Probable ATP-dependent RNA helicase ddx6; Belongs to the DEAD box helicase family.
  
 0.919
LOC106570129
Probable ATP-dependent RNA helicase ddx6 isoform X1; Belongs to the DEAD box helicase family.
  
 0.919
LOC106561533
Protein LSM14 homolog A-like isoform X4.
   
 
 0.897
LOC106573260
Protein LSM14 homolog A-like isoform X2.
   
 
 0.897
LOC106562375
Protein LSM14 homolog A-like isoform X2.
   
 
 0.897
LOC106587566
Protein LSM14 homolog A-like isoform X2.
   
 
 0.897
eif4e1a
Eukaryotic translation initiation factor 4E-1A; Belongs to the eukaryotic initiation factor 4E family.
    
 
 0.890
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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