STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sf3a2Splicing factor 3A subunit 2. (308 aa)    
Predicted Functional Partners:
sf3a1
Splicing factor 3A subunit 1 isoform X3.
   
 0.998
LOC106588664
Splicing factor 3A subunit 3.
    
 0.998
LOC106570281
Splicing factor 3A subunit 3-like.
    
 0.998
LOC106585510
Splicing factor 3A subunit 1-like isoform X1.
   
 0.998
sf3b5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.995
ddx46
Probable ATP-dependent RNA helicase DDX46.
    
 0.989
SF3B4
Splicing factor 3B subunit 4-like.
   
 0.987
LOC106588579
Splicing factor 3B subunit 4-like.
   
 0.987
LOC106608993
Splicing factor 3B subunit 2-like isoform X1.
   
 0.981
LOC106586372
Splicing factor 3B subunit 1 isoform X1.
    
 0.981
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.