LOC106582870 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106582870

Metabotropic glutamate receptor 6-like. (911 aa)

Predicted Functional Partners:

wdr90

0.634

ENSSSAP00000017985

0.527

LOC106582056

0.490

LOC106565327

0.459

LOC106583186

0.458

LOC106573453

0.458

LOC106583524

0.458

LOC106565576

0.458

LOC106561201

0.456

LOC106568432

0.452

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000017985	LOC106561201	ENSSSAP00000017985	ENSSSAP00000112959	annotation not available	Metabotropic glutamate receptor 3-like.	0.527
ENSSSAP00000017985	LOC106565327	ENSSSAP00000017985	ENSSSAP00000069852	annotation not available	Metabotropic glutamate receptor 2-like.	0.527
ENSSSAP00000017985	LOC106565576	ENSSSAP00000017985	ENSSSAP00000118585	annotation not available	Metabotropic glutamate receptor 2-like isoform X1.	0.527
ENSSSAP00000017985	LOC106573453	ENSSSAP00000017985	ENSSSAP00000045899	annotation not available	Metabotropic glutamate receptor 3-like.	0.527
ENSSSAP00000017985	LOC106582056	ENSSSAP00000017985	ENSSSAP00000100491	annotation not available	EF-hand domain-containing family member B-like isoform X2.	0.992
ENSSSAP00000017985	LOC106582870	ENSSSAP00000017985	ENSSSAP00000119830	annotation not available	Metabotropic glutamate receptor 6-like.	0.527
ENSSSAP00000017985	LOC106583186	ENSSSAP00000017985	ENSSSAP00000017819	annotation not available	Metabotropic glutamate receptor 2-like.	0.527
ENSSSAP00000017985	LOC106583524	ENSSSAP00000017985	ENSSSAP00000115078	annotation not available	Metabotropic glutamate receptor 2-like.	0.527
ENSSSAP00000017985	wdr90	ENSSSAP00000017985	ENSSSAP00000064648	annotation not available	WD repeat-containing protein 90.	0.999
LOC106561201	ENSSSAP00000017985	ENSSSAP00000112959	ENSSSAP00000017985	Metabotropic glutamate receptor 3-like.	annotation not available	0.527
LOC106561201	LOC106568432	ENSSSAP00000112959	ENSSSAP00000049675	Metabotropic glutamate receptor 3-like.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.413
LOC106561201	LOC106582056	ENSSSAP00000112959	ENSSSAP00000100491	Metabotropic glutamate receptor 3-like.	EF-hand domain-containing family member B-like isoform X2.	0.502
LOC106561201	LOC106582870	ENSSSAP00000112959	ENSSSAP00000119830	Metabotropic glutamate receptor 3-like.	Metabotropic glutamate receptor 6-like.	0.456
LOC106561201	wdr90	ENSSSAP00000112959	ENSSSAP00000064648	Metabotropic glutamate receptor 3-like.	WD repeat-containing protein 90.	0.634
LOC106565327	ENSSSAP00000017985	ENSSSAP00000069852	ENSSSAP00000017985	Metabotropic glutamate receptor 2-like.	annotation not available	0.527
LOC106565327	LOC106568432	ENSSSAP00000069852	ENSSSAP00000049675	Metabotropic glutamate receptor 2-like.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.413
LOC106565327	LOC106582056	ENSSSAP00000069852	ENSSSAP00000100491	Metabotropic glutamate receptor 2-like.	EF-hand domain-containing family member B-like isoform X2.	0.502
LOC106565327	LOC106582870	ENSSSAP00000069852	ENSSSAP00000119830	Metabotropic glutamate receptor 2-like.	Metabotropic glutamate receptor 6-like.	0.459
LOC106565327	wdr90	ENSSSAP00000069852	ENSSSAP00000064648	Metabotropic glutamate receptor 2-like.	WD repeat-containing protein 90.	0.634
LOC106565576	ENSSSAP00000017985	ENSSSAP00000118585	ENSSSAP00000017985	Metabotropic glutamate receptor 2-like isoform X1.	annotation not available	0.527