Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115192173Transmembrane 4 L6 family member 1-like. (196 aa)    
Predicted Functional Partners:
LOC115164792
GDNF family receptor alpha-2-like.
   
  
 0.690
ENSSTUP00000110396
Leucine-rich repeats and IQ motif containing 1.
      
 0.684
syce1
Synaptonemal complex central element protein 1.
      
 0.683
ENSSTUP00000004336
annotation not available
      
 0.653
sycp1
Synaptonemal complex protein 1.
      
 0.643
LOC115180813
Stimulated by retinoic acid gene 8 protein homolog.
      
 0.573
LOC115180810
Stimulated by retinoic acid gene 8 protein homolog.
      
 0.573
piwil1
Piwi like RNA-mediated gene silencing 1.
      
 0.572
ENSSTUP00000036941
annotation not available
      
 0.535
LOC115173221
Guanine nucleotide-binding protein G(T) subunit gamma-T1-like.
   
  
 0.525
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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