Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000000092Myosin light chain, phosphorylatable, fast skeletal muscle a. (174 aa)    
Predicted Functional Partners:
ENSSTUP00000085258
Myosin, light chain 1, alkali; skeletal, fast.
   
 0.986
LOC115155641
Myosin light chain 1, skeletal muscle isoform-like.
   
 0.986
LOC115168622
Troponin C, skeletal muscle-like.
   
 0.938
LOC115165983
Troponin C, skeletal muscle.
   
 0.938
LOC115147213
Myosin-9-like.
   
 0.929
ENSSTUP00000101589
Myosin, heavy chain 9a, non-muscle.
   
 0.929
ENSSTUP00000001655
Myosin, heavy chain 14, non-muscle.
   
 0.913
LOC115201436
Myosin-9-like.
   
 0.913
LOC115170532
Myosin-9-like.
   
 0.913
ENSSTUP00000062234
annotation not available
   
 0.910
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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