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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115198859U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like. (187 aa)    
Predicted Functional Partners:
ENSSTUP00000038781
Small nuclear ribonucleoprotein 35 (U11/U12).
    
 0.881
LOC115170755
U1 small nuclear ribonucleoprotein 70 kDa-like.
    
 0.881
LOC115192113
U1 small nuclear ribonucleoprotein 70 kDa-like.
    
 0.881
LOC115179437
U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like.
     
 0.869
LOC115176667
U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like.
     
 0.869
LOC115166907
Programmed cell death protein 7-like.
     
 0.814
LOC115203402
Programmed cell death protein 7-like.
     
 0.814
ENSSTUP00000047658
annotation not available
   
 0.721
SNRPF
Small nuclear ribonucleoprotein F-like.
   
 0.721
LOC115180441
Small nuclear ribonucleoprotein F.
   
 0.721
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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