Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115195603Programmed cell death protein 6-like. (226 aa)    
Predicted Functional Partners:
ENSSTUP00000072212
Programmed cell death 6 interacting protein.
    
 
 0.871
ENSSTUP00000085666
Programmed cell death 6 interacting protein.
    
 
 0.871
tsg101
Tumor susceptibility 101.
   
 
 0.859
LOC115152745
Protein transport protein Sec31A-like.
    
 
 0.810
LOC115159235
Protein transport protein Sec31A-like.
    
 
 0.810
SEC31A
SEC31 homolog A, COPII coat complex component.
    
 
 0.810
ENSSTUP00000042650
annotation not available
    
 0.743
ENSSTUP00000043180
annotation not available
    
 0.743
cast
Calpastatin.
    
 0.743
ENSSTUP00000021303
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 
 0.719
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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