Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115195602Meiotic recombination protein REC8 homolog. (599 aa)    
Predicted Functional Partners:
ENSSTUP00000033589
Extra spindle pole bodies like 1, separase.
   
 0.991
ENSSTUP00000081654
Structural maintenance of chromosomes 3.
   
 0.991
LOC115147376
Structural maintenance of chromosomes protein 3.
   
 0.991
LOC115165483
Structural maintenance of chromosomes protein 1A-like.
   
 0.982
LOC115167824
Structural maintenance of chromosomes protein 1A.
   
 0.982
LOC115197583
Structural maintenance of chromosomes protein 1B-like.
   
 0.982
LOC115168062
Double-strand-break repair protein rad21 homolog.
    
 0.960
RAD21
RAD21 cohesin complex component.
    
 0.960
LOC115187877
Double-strand-break repair protein rad21 homolog A-like.
    
0.960
LOC115187876
Double-strand-break repair protein rad21 homolog A-like.
    
0.960
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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