STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115195602Meiotic recombination protein REC8 homolog. (599 aa)    
Predicted Functional Partners:
ENSSTUP00000081654
Structural maintenance of chromosomes 3.
   
 0.987
LOC115147376
Structural maintenance of chromosomes protein 3.
   
 0.987
ENSSTUP00000028195
annotation not available
   
 0.983
pds5b
PDS5 cohesin associated factor B.
   
 0.983
ENSSTUP00000083854
NIPBL cohesin loading factor a.
   
 0.979
ENSSTUP00000090555
NIPBL cohesin loading factor b.
   
 0.979
LOC115165483
Structural maintenance of chromosomes protein 1A-like.
   
 0.978
LOC115167824
Structural maintenance of chromosomes protein 1A.
   
 0.978
LOC115197583
Structural maintenance of chromosomes protein 1B-like.
   
 0.978
ENSSTUP00000033589
Extra spindle pole bodies like 1, separase.
   
 0.976
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.