Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115168139Homeobox protein Nkx-2.5-like. (315 aa)    
Predicted Functional Partners:
gata4
GATA binding protein 4.
   
 0.966
TBX20
T-box transcription factor TBX20.
   
 0.955
LOC115176803
T-box transcription factor TBX20-like.
   
 0.955
LOC115157220
GATA-binding factor 6-B-like.
   
 0.950
GATA6
GATA-binding factor 6-B-like.
   
 0.950
LOC115159566
T-box transcription factor TBX5-A-like.
   
 0.947
LOC115204067
T-box transcription factor TBX5-A-like.
   
 0.947
LOC115168641
Transcription factor GATA-5-like.
   
 0.942
LOC115166005
Transcription factor GATA-5-like.
   
 0.942
LOC115151796
Myocyte-specific enhancer factor 2B-like.
    
 0.936
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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