STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THADATHADA armadillo repeat containing. (1799 aa)    
Predicted Functional Partners:
LOC115159622
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase.
   
 
 0.987
ftsj3
FtsJ RNA 2'-O-methyltransferase 3.
   
 
 0.907
ENSSTUP00000069519
annotation not available
   
 
 0.907
ENSSTUP00000021616
Mitochondrial rRNA methyltransferase 2.
   
 
 0.900
LOC115198414
rRNA methyltransferase 2, mitochondrial-like.
   
 
 0.900
polr1a
RNA polymerase I subunit A.
   
    0.775
ENSSTUP00000079642
WD repeat domain 6.
   
 
 0.762
LOC115155518
Major histocompatibility complex class I-related gene protein-like.
    
   0.740
ENSSTUP00000072014
annotation not available
    
   0.740
LOC115175890
H-2 class I histocompatibility antigen, Q10 alpha chain-like.
    
   0.740
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.