Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115194630High mobility group protein B3-like. (206 aa)    
Predicted Functional Partners:
LOC115160708
Beclin-1.
    
 0.823
ENSSTUP00000043761
annotation not available
    
 0.823
ENSSTUP00000043840
annotation not available
    
 0.823
ENSSTUP00000043957
annotation not available
    
 0.823
ENSSTUP00000044054
annotation not available
    
 0.823
ENSSTUP00000102031
annotation not available
    
 0.823
ENSSTUP00000093510
Actin related protein 8.
    
 0.804
LOC115198035
Toll-like receptor 2.
    
 0.758
LOC115173421
Toll-like receptor 6.
    
 0.758
ENSSTUP00000089042
Toll-like receptor 18.
    
 0.758
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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