Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115206285IQ domain-containing protein K-like. (356 aa)    
Predicted Functional Partners:
efcab11
EF-hand calcium binding domain 11.
      
 0.704
ENSSTUP00000029054
Si:dkey-75b17.1.
      
 0.702
LOC115187577
Sorting nexin-9-like.
      
 0.686
LOC115161914
Sorting nexin-9-like.
      
 0.686
CCNO
Cyclin O.
      
 0.605
LOC115160946
Solute carrier family 49 member 4-like.
      
 0.599
ENSSTUP00000103779
Solute carrier family 49 member 4.
      
 0.599
LOC115162262
Serine/threonine-protein kinase PLK4-like.
      
 0.572
LOC115172555
Serine/threonine-protein kinase PLK4-like.
      
 0.572
ENSSTUP00000083854
NIPBL cohesin loading factor a.
    
   0.555
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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