Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC115207222Synaptogyrin-2-like. (228 aa)    
Predicted Functional Partners:
ENSSTUP00000065533
NOP2/Sun RNA methyltransferase 5.
      
 0.586
ENSSTUP00000076017
Threonine aldolase 1.
      
 0.549
ENSSTUP00000092316
annotation not available
      
 0.520
ENSSTUP00000106657
annotation not available
      
 0.520
SCAMP1
Secretory carrier-associated membrane protein 1-like.
   
 
 0.516
LOC115159731
Secretory carrier-associated membrane protein 1-like.
   
 
 0.516
LOC115178317
Uncharacterized protein C17orf67 homolog.
      
 0.501
LOC115208625
Uncharacterized protein C17orf67 homolog.
      
 0.501
ENSSTUP00000053905
annotation not available
      
 0.500
ENSSTUP00000070599
Intersectin 2b.
      
 0.500
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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