Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115196891Coatomer subunit zeta-1-like. (203 aa)    
Predicted Functional Partners:
LOC115162950
Coatomer subunit delta-like.
   
 0.969
LOC115205905
Coatomer subunit delta-like.
   
 0.969
LOC115169932
Coatomer subunit beta.
   
 0.968
LOC115156762
Coatomer subunit beta'-like.
   
 0.968
LOC115154960
Coatomer subunit delta-like.
   
 0.965
LOC115199126
Coatomer subunit gamma-2.
   
 0.963
LOC115180523
Coatomer subunit gamma-2.
   
 0.963
ENSSTUP00000005447
annotation not available
   
 0.962
LOC115158142
Coatomer subunit epsilon-like.
   
 0.962
LOC115167087
Coatomer subunit beta-like.
   
 0.960
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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