Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SGCZSarcoglycan zeta. (317 aa)    
Predicted Functional Partners:
sspn
Sarcospan.
   
 0.986
ENSSTUP00000017418
Sarcoglycan, alpha.
   
 0.976
LOC115206423
Gamma-sarcoglycan-like.
  
0.973
SGCG
Sarcoglycan gamma.
  
0.973
LOC115163513
Gamma-sarcoglycan-like.
  
0.973
sgce
Sarcoglycan epsilon.
   
 0.968
LOC115175523
Epsilon-sarcoglycan-like.
   
 0.968
dag1
Dystroglycan 1.
    
 0.961
LOC115207273
Dystroglycan-like.
    
 0.961
LOC115192394
Beta-sarcoglycan-like.
    
 0.961
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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