Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115196923Chromobox protein homolog 1-like. (237 aa)    
Predicted Functional Partners:
LOC115195107
Transcription factor E2F6-like.
   
 0.876
ENSSTUP00000090223
Si:ch211-195d17.2.
   
 0.876
ENSSTUP00000002650
annotation not available
    
 0.852
LOC115156569
MBT domain-containing protein 1-like.
    
 0.852
MBTD1
MBT domain-containing protein 1-like.
    
 0.852
LOC115153582
Lethal(3)malignant brain tumor-like protein 2.
    
 0.852
LOC115201229
MBT domain-containing protein 1-like.
    
 0.852
pcgf6
Polycomb group ring finger 6.
    
 0.839
ENSSTUP00000037836
annotation not available
    
 0.839
LOC115205142
Polycomb group RING finger protein 1-like.
    
 0.839
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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