Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115207305Metalloproteinase inhibitor 2-like. (220 aa)    
Predicted Functional Partners:
ENSSTUP00000037734
Matrix metallopeptidase 9.
   
 0.899
LOC115168666
Matrix metalloproteinase-9-like.
   
 0.899
ENSSTUP00000004636
Matrix metallopeptidase 15b.
    
 0.888
LOC115167475
Matrix metalloproteinase-15-like.
    
 0.888
LOC115157316
Matrix metalloproteinase-14-like.
    
 0.888
LOC115169490
Matrix metalloproteinase-14-like.
    
 0.888
LOC115203309
72 kDa type IV collagenase-like.
   
 0.825
MMP23B
Matrix metallopeptidase 23B.
   
 0.800
MMP23B-2
Matrix metalloproteinase-23-like.
   
 0.800
ADAM17
ADAM metallopeptidase domain 17.
    
 
 0.790
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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