Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115191693Atrophin-1-like. (518 aa)    
Predicted Functional Partners:
ENSSTUP00000093510
Actin related protein 8.
   
 0.930
LOC115176758
INO80 complex subunit C-like.
    
 0.881
LOC115176758-2
INO80 complex subunit C-like.
    
 0.881
actr5
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4-like 2.
    
 0.880
ENSSTUP00000106503
annotation not available
    
 0.880
LOC115207856
ruvB-like 1.
    
 0.875
LOC115150553
ruvB-like 1.
    
 0.875
LOC115151526
Actin-like protein 6A.
    
 0.853
ENSSTUP00000063476
Actin-like 6A.
    
 0.853
ENSSTUP00000004917
RuvB-like AAA ATPase 2.
    
 
 0.753
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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