Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
ENSSTUP00000001272MLLT3 super elongation complex subunit. (606 aa)    
Predicted Functional Partners:
LOC115153986
AF4/FMR2 family member 4-like.
    
 0.973
LOC115148529
AF4/FMR2 family member 4-like.
    
 0.973
cdk9
Cyclin dependent kinase 9.
    
 0.966
ENSSTUP00000028920
annotation not available
    
 0.959
ENSSTUP00000079389
annotation not available
    
 0.959
LOC115179347
ELL-associated factor 1-like.
   
 0.944
EAF1
ELL-associated factor 1-like.
   
 0.944
LOC115160951
ELL-associated factor 2-like.
   
 0.917
LOC115155615
ELL-associated factor 2-like.
   
 0.917
ell
Elongation factor for RNA polymerase II.
    
 0.900
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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