Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ENSSTUP00000001290NADH:ubiquinone oxidoreductase subunit B. (115 aa)    
Predicted Functional Partners:
ndufs4
NADH:ubiquinone oxidoreductase subunit S4.
   
 0.998
LOC115163851
NADH dehydrogenase [ubiquinone] 1 subunit C2-like.
   
 0.998
ndufb3
NADH:ubiquinone oxidoreductase subunit B3.
   
 0.998
LOC115152231
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial-like.
   
 0.998
ndufb8
NADH:ubiquinone oxidoreductase subunit B8.
   
 0.998
ndufab1
NADH:ubiquinone oxidoreductase subunit AB1.
   
 0.998
LOC115180276
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12-like.
   
 0.997
ENSSTUP00000065428
NADH:ubiquinone oxidoreductase subunit A12.
   
 0.997
ENSSTUP00000007952
NADH:ubiquinone oxidoreductase subunit A6.
   
 0.996
LOC115202869
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial-like.
   
 0.996
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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