LOC115195999 protein (Salmo trutta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC115195999

Immunoglobulin superfamily member 10-like. (2650 aa)

Predicted Functional Partners:

gtpbp6

0.691

LOC115205755

0.647

LOC115166697

0.647

ENSSTUP00000004813

0.638

LOC115170189

0.638

LOC115195355

0.638

LOC115157587

0.638

ENSSTUP00000001354

0.621

pudp

0.621

ENSSTUP00000024598

0.608

Your Current Organism:

Salmo trutta

NCBI taxonomy Id: 8032
Other names: S. trutta, river trout

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSTUP00000001354	ENSSTUP00000024598	ENSSTUP00000001354	ENSSTUP00000024598	annotation not available	annotation not available	0.600
ENSSTUP00000001354	LOC115195999	ENSSTUP00000001354	ENSSTUP00000001304	annotation not available	Immunoglobulin superfamily member 10-like.	0.621
ENSSTUP00000001354	gtpbp6	ENSSTUP00000001354	ENSSTUP00000070647	annotation not available	GTP binding protein 6 (putative).	0.724
ENSSTUP00000004813	LOC115157587	ENSSTUP00000004813	ENSSTUP00000071555	Netrin g1a.	netrin-G1-like.	0.624
ENSSTUP00000004813	LOC115170189	ENSSTUP00000004813	ENSSTUP00000042346	Netrin g1a.	netrin-G1-like.	0.624
ENSSTUP00000004813	LOC115195355	ENSSTUP00000004813	ENSSTUP00000046365	Netrin g1a.	netrin-G1-like.	0.624
ENSSTUP00000004813	LOC115195999	ENSSTUP00000004813	ENSSTUP00000001304	Netrin g1a.	Immunoglobulin superfamily member 10-like.	0.638
ENSSTUP00000024598	ENSSTUP00000001354	ENSSTUP00000024598	ENSSTUP00000001354	annotation not available	annotation not available	0.600
ENSSTUP00000024598	LOC115195999	ENSSTUP00000024598	ENSSTUP00000001304	annotation not available	Immunoglobulin superfamily member 10-like.	0.608
ENSSTUP00000024598	gtpbp6	ENSSTUP00000024598	ENSSTUP00000070647	annotation not available	GTP binding protein 6 (putative).	0.699
ENSSTUP00000024598	pudp	ENSSTUP00000024598	ENSSTUP00000109711	annotation not available	Pseudouridine 5'-phosphatase.	0.600
LOC115157587	ENSSTUP00000004813	ENSSTUP00000071555	ENSSTUP00000004813	netrin-G1-like.	Netrin g1a.	0.624
LOC115157587	LOC115170189	ENSSTUP00000071555	ENSSTUP00000042346	netrin-G1-like.	netrin-G1-like.	0.624
LOC115157587	LOC115195355	ENSSTUP00000071555	ENSSTUP00000046365	netrin-G1-like.	netrin-G1-like.	0.624
LOC115157587	LOC115195999	ENSSTUP00000071555	ENSSTUP00000001304	netrin-G1-like.	Immunoglobulin superfamily member 10-like.	0.638
LOC115166697	LOC115195999	ENSSTUP00000084398	ENSSTUP00000001304	Elongation factor 1-gamma.	Immunoglobulin superfamily member 10-like.	0.647
LOC115166697	LOC115205755	ENSSTUP00000084398	ENSSTUP00000083489	Elongation factor 1-gamma.	Elongation factor 1-gamma-like.	0.988
LOC115170189	ENSSTUP00000004813	ENSSTUP00000042346	ENSSTUP00000004813	netrin-G1-like.	Netrin g1a.	0.624
LOC115170189	LOC115157587	ENSSTUP00000042346	ENSSTUP00000071555	netrin-G1-like.	netrin-G1-like.	0.624
LOC115170189	LOC115195355	ENSSTUP00000042346	ENSSTUP00000046365	netrin-G1-like.	netrin-G1-like.	0.624