Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nphp1Nephrocystin 1. (667 aa)    
Predicted Functional Partners:
NPHP4
Nephrocystin 4.
   
 0.999
rpgrip1l
RPGRIP1 like.
    
 0.998
ENSSTUP00000021141
annotation not available
    
 
 0.911
ENSSTUP00000021308
Retinitis pigmentosa GTPase regulator b.
    
 
 0.911
ENSSTUP00000024476
annotation not available
    
 
 0.911
ENSSTUP00000111044
annotation not available
    
 
 0.911
LOC115200804
Polycystin-1-like.
   
 
 0.893
nphp3
Nephrocystin 3.
    
 0.880
ahi1
Abelson helper integration site 1.
    
 0.856
LOC115158477
Histone H2A deubiquitinase MYSM1-like.
    
 0.855
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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